IL_6D9J_092

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACC*GCGU

Length

7 nucleotides

Bulged bases

6D9J|1|8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_092 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2548

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6D9J|1|5|A|5
6D9J|1|5|C|6
6D9J|1|5|C|7
*
6D9J|1|8|G|149
6D9J|1|8|C|150
6D9J|1|8|G|151
6D9J|1|8|U|152

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain X

eL23