IL_6D9J_112

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6D9J|1|5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_112 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2154

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_08770.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6D9J|1|5|G|448
6D9J|1|5|C|449
6D9J|1|5|G|450
6D9J|1|5|C|451
*
6D9J|1|5|G|1296
6D9J|1|5|U|1297
6D9J|1|5|C|1298

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

eL32

Chain f

eL33