IL_6D9J_112
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGC*GUC
- Length
- 7 nucleotides
- Bulged bases
- 6D9J|1|5|C|449
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_112 not in the Motif Atlas
- Geometric match to IL_7A0S_092
- Geometric discrepancy: 0.2154
- The information below is about IL_7A0S_092
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_08770.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6D9J|1|5|G|448
6D9J|1|5|C|449
6D9J|1|5|G|450
6D9J|1|5|C|451
*
6D9J|1|5|G|1296
6D9J|1|5|U|1297
6D9J|1|5|C|1298
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain e
- eL32
- Chain f
- eL33
Coloring options: