3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCGC*GUC
Length
7 nucleotides
Bulged bases
6D9J|1|5|C|449
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_112 not in the Motif Atlas
Geometric match to IL_7A0S_092
Geometric discrepancy: 0.2154
The information below is about IL_7A0S_092
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_08770.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
5

Unit IDs

6D9J|1|5|G|448
6D9J|1|5|C|449
6D9J|1|5|G|450
6D9J|1|5|C|451
*
6D9J|1|5|G|1296
6D9J|1|5|U|1297
6D9J|1|5|C|1298

Current chains

Chain 5
28S rRNA

Nearby chains

Chain e
eL32
Chain f
eL33

Coloring options:


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