3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_138 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.333
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6D9J|1|5|G|1425
6D9J|1|5|G|1426
6D9J|1|5|A|1427
6D9J|1|5|U|1428
6D9J|1|5|C|1429
*
6D9J|1|5|G|1455
6D9J|1|5|C|1456
6D9J|1|5|G|1457
6D9J|1|5|C|1458
6D9J|1|5|A|1459
6D9J|1|5|C|1460

Current chains

Chain 5
28S rRNA

Nearby chains

Chain Q
eL18
Chain b
eL29

Coloring options:


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