IL_6D9J_138

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_138 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.333

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6D9J|1|5|G|1425
6D9J|1|5|G|1426
6D9J|1|5|A|1427
6D9J|1|5|U|1428
6D9J|1|5|C|1429
*
6D9J|1|5|G|1455
6D9J|1|5|C|1456
6D9J|1|5|G|1457
6D9J|1|5|C|1458
6D9J|1|5|A|1459
6D9J|1|5|C|1460

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain b

eL29