IL_6D9J_157

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCU*ACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_157 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.3372

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6D9J|1|5|G|1752
6D9J|1|5|G|1753
6D9J|1|5|U|1754
6D9J|1|5|C|1755
6D9J|1|5|U|1756
*
6D9J|1|5|A|1776
6D9J|1|5|C|1777
6D9J|1|5|C|1778

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain I

uL16