IL_6D9J_162
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAAG*CCAUAC
- Length
- 12 nucleotides
- Bulged bases
- 6D9J|1|5|U|2070
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_162 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2825
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6D9J|1|5|G|1904
6D9J|1|5|U|1905
6D9J|1|5|U|1906
6D9J|1|5|A|1907
6D9J|1|5|A|1908
6D9J|1|5|G|1909
*
6D9J|1|5|C|2067
6D9J|1|5|C|2068
6D9J|1|5|A|2069
6D9J|1|5|U|2070
6D9J|1|5|A|2071
6D9J|1|5|C|2072
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- uL30
- Chain Q
- eL18
- Chain e
- eL32
- Chain f
- eL33
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