IL_6D9J_163
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 6D9J|1|5|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_163 not in the Motif Atlas
- Geometric match to IL_1NBS_006
- Geometric discrepancy: 0.1683
- The information below is about IL_1NBS_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
6D9J|1|5|C|1911
6D9J|1|5|G|1912
6D9J|1|5|C|1913
6D9J|1|5|C|1914
6D9J|1|5|C|1915
6D9J|1|5|G|1916
6D9J|1|5|A|1917
6D9J|1|5|U|1918
6D9J|1|5|G|1919
6D9J|1|5|C|1920
*
6D9J|1|5|G|2063
6D9J|1|5|G|2064
6D9J|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
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