IL_6D9J_184

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6D9J|1|5|U|2687

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_184 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2109

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6D9J|1|5|C|2646
6D9J|1|5|A|2647
6D9J|1|5|G|2648
*
6D9J|1|5|C|2685
6D9J|1|5|G|2686
6D9J|1|5|U|2687
6D9J|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34