IL_6D9J_192

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6D9J|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_192 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.3684

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6D9J|1|5|A|2850
6D9J|1|5|G|2851
6D9J|1|5|U|2852
6D9J|1|5|C|2853
6D9J|1|5|G|2854
6D9J|1|5|G|2855
*
6D9J|1|5|C|3837
6D9J|1|5|U|3838
6D9J|1|5|G|3839
6D9J|1|5|U|3840

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14