IL_6D9J_196
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6D9J|1|5|A|3663, 6D9J|1|5|U|3679, 6D9J|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_196 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.2295
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D9J|1|5|C|3660
6D9J|1|5|G|3661
6D9J|1|5|A|3662
6D9J|1|5|A|3663
6D9J|1|5|G|3664
6D9J|1|5|G|3665
*
6D9J|1|5|U|3677
6D9J|1|5|G|3678
6D9J|1|5|U|3679
6D9J|1|5|U|3680
6D9J|1|5|G|3681
6D9J|1|5|A|3682
6D9J|1|5|C|3683
6D9J|1|5|G|3684
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain p
- eL43
Coloring options: