IL_6D9J_198

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6D9J|1|5|A|3746, 6D9J|1|5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_198 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1922

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6D9J|1|5|U|3704
6D9J|1|5|G|3705
*
6D9J|1|5|U|3745
6D9J|1|5|A|3746
6D9J|1|5|A|3747
6D9J|1|5|A|3748

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2