IL_6D9J_221
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACCU*AGC
- Length
- 8 nucleotides
- Bulged bases
- 6D9J|1|5|C|4349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_221 not in the Motif Atlas
- Geometric match to IL_5TBW_064
- Geometric discrepancy: 0.3391
- The information below is about IL_5TBW_064
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_15698.1
- Basepair signature
- cWW-tSH-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
6D9J|1|5|G|4347
6D9J|1|5|A|4348
6D9J|1|5|C|4349
6D9J|1|5|C|4350
6D9J|1|5|U|4351
*
6D9J|1|5|A|4363
6D9J|1|5|G|4364
6D9J|1|5|C|4365
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain Q
- eL18
- Chain a
- uL15
- Chain o
- eL42
Coloring options: