IL_6D9J_227

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6D9J|1|5|G|4522, 6D9J|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_227 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.2218

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6D9J|1|5|C|4456
6D9J|1|5|U|4457
6D9J|1|5|C|4458
*
6D9J|1|5|G|4520
6D9J|1|5|U|4521
6D9J|1|5|G|4522
6D9J|1|5|A|4523
6D9J|1|5|G|4524

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14