IL_6D9J_239

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6D9J|1|5|U|4634, 6D9J|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_239 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2295

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6D9J|1|5|U|4632
6D9J|1|5|G|4633
6D9J|1|5|U|4634
6D9J|1|5|A|4635
6D9J|1|5|U|4636
6D9J|1|5|G|4637
*
6D9J|1|5|C|4662
6D9J|1|5|G|4663
6D9J|1|5|A|4664
6D9J|1|5|A|4665
6D9J|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31