IL_6D9J_240

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGC*GGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_240 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2501

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6D9J|1|5|G|4637
6D9J|1|5|U|4638
6D9J|1|5|G|4639
6D9J|1|5|C|4640
*
6D9J|1|5|G|4659
6D9J|1|5|G|4660
6D9J|1|5|G|4661
6D9J|1|5|C|4662

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31