IL_6D9J_278
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6D9J|1|2|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_278 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2992
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6D9J|1|2|G|1281
6D9J|1|2|A|1282
6D9J|1|2|C|1283
6D9J|1|2|A|1284
6D9J|1|2|G|1285
6D9J|1|2|G|1286
6D9J|1|2|A|1287
6D9J|1|2|U|1288
6D9J|1|2|U|1289
6D9J|1|2|G|1290
*
6D9J|1|2|C|1309
6D9J|1|2|U|1310
6D9J|1|2|C|1311
6D9J|1|2|G|1312
6D9J|1|2|A|1313
6D9J|1|2|U|1314
6D9J|1|2|U|1315
6D9J|1|2|C|1316
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain LL
- eS10
- Chain NN
- eS12
- Chain ee
- eS29
- Chain gg
- eS31
Coloring options: