IL_6D9J_281

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUU*AACAG

Length

9 nucleotides

Bulged bases

6D9J|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_281 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3026

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6D9J|1|2|C|1337
6D9J|1|2|G|1338
6D9J|1|2|U|1339
6D9J|1|2|U|1340
*
6D9J|1|2|A|1486
6D9J|1|2|A|1487
6D9J|1|2|C|1488
6D9J|1|2|A|1489
6D9J|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain DD

uS5

Chain EE

uS3

Chain RR

uS9

Chain VV

uS10

Chain ee

eS29