3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCCCC*GCGGGA
Length
11 nucleotides
Bulged bases
6D9J|1|5|C|143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_291 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.2612
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6D9J|1|5|U|122
6D9J|1|5|C|123
6D9J|1|5|C|124
6D9J|1|5|C|125
6D9J|1|5|C|126
*
6D9J|1|5|G|142
6D9J|1|5|C|143
6D9J|1|5|G|144
6D9J|1|5|G|145
6D9J|1|5|G|146
6D9J|1|5|A|147

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain G
eL8
Chain N
eL15
Chain X
eL23
Chain h
eL35

Coloring options:


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