IL_6D9J_304
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6D9J|1|5|G|1625, 6D9J|1|5|A|1637, 6D9J|1|5|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_304 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.2924
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6D9J|1|5|G|1624
6D9J|1|5|G|1625
6D9J|1|5|G|1626
*
6D9J|1|5|U|1636
6D9J|1|5|A|1637
6D9J|1|5|A|1638
6D9J|1|5|U|1639
6D9J|1|5|C|1640
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain P
- uL22
- Chain j
- eL37
Coloring options: