IL_6D9J_310
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGGC*GCCG
- Length
- 9 nucleotides
- Bulged bases
- 6D9J|1|5|U|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_310 not in the Motif Atlas
- Homologous match to IL_8C3A_060
- Geometric discrepancy: 0.5461
- The information below is about IL_8C3A_060
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6D9J|1|5|C|2083
6D9J|1|5|U|2084
6D9J|1|5|G|2085
6D9J|1|5|G|2086
6D9J|1|5|C|2087
*
6D9J|1|5|G|2270
6D9J|1|5|C|2271
6D9J|1|5|C|2272
6D9J|1|5|G|2273
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain F
- uL30
- Chain Q
- eL18
- Chain e
- eL32
- Chain r
- eL28
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