IL_6D9J_311
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUGG*CGCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_311 not in the Motif Atlas
- Geometric match to IL_8C3A_111
- Geometric discrepancy: 0.3594
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6D9J|1|5|G|2541
6D9J|1|5|G|2542
6D9J|1|5|A|2543
6D9J|1|5|G|2544
6D9J|1|5|U|2545
6D9J|1|5|G|2546
6D9J|1|5|G|2547
*
6D9J|1|5|C|2772
6D9J|1|5|G|2773
6D9J|1|5|C|2774
6D9J|1|5|C|2775
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain g
- eL34
- Chain k
- eL38
Coloring options: