IL_6D9J_322
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAU*AUACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_322 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3167
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6D9J|1|5|U|4295
6D9J|1|5|U|4296
6D9J|1|5|G|4297
6D9J|1|5|A|4298
6D9J|1|5|U|4299
*
6D9J|1|5|A|4311
6D9J|1|5|U|4312
6D9J|1|5|A|4313
6D9J|1|5|C|4314
6D9J|1|5|A|4315
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain Q
- eL18
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
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