3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUGAU*AUACA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_322 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.3167
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6D9J|1|5|U|4295
6D9J|1|5|U|4296
6D9J|1|5|G|4297
6D9J|1|5|A|4298
6D9J|1|5|U|4299
*
6D9J|1|5|A|4311
6D9J|1|5|U|4312
6D9J|1|5|A|4313
6D9J|1|5|C|4314
6D9J|1|5|A|4315

Current chains

Chain 5
28S rRNA

Nearby chains

Chain D
uL18
Chain Q
eL18
Chain T
eL21
Chain b
eL29
Chain o
eL42

Coloring options:


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