IL_6D9J_323

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCUUGUG*UUUUUGAUCC

Length

18 nucleotides

Bulged bases

6D9J|1|5|U|4437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|4400
6D9J|1|5|G|4401
6D9J|1|5|C|4402
6D9J|1|5|U|4403
6D9J|1|5|U|4404
6D9J|1|5|G|4405
6D9J|1|5|U|4406
6D9J|1|5|G|4407
*
6D9J|1|5|U|4435
6D9J|1|5|U|4436
6D9J|1|5|U|4437
6D9J|1|5|U|4438
6D9J|1|5|U|4439
6D9J|1|5|G|4440
6D9J|1|5|A|4441
6D9J|1|5|U|4442
6D9J|1|5|C|4443
6D9J|1|5|C|4444

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain B

uL3

Chain I

uL16

Chain b

eL29