IL_6D9J_334

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6D9J|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_334 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.381

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6D9J|1|2|G|925
6D9J|1|2|A|926
6D9J|1|2|C|927
*
6D9J|1|2|G|1014
6D9J|1|2|U|1015
6D9J|1|2|U|1016
6D9J|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain OO

uS15

Chain cc

eS27