IL_6D9J_352

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6D9J|1|5|A|4708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_352 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.3156

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6D9J|1|5|G|4680
6D9J|1|5|A|4681
6D9J|1|5|U|4682
6D9J|1|5|U|4683
6D9J|1|5|A|4684
6D9J|1|5|U|4685
*
6D9J|1|5|A|4705
6D9J|1|5|G|4706
6D9J|1|5|A|4707
6D9J|1|5|A|4708
6D9J|1|5|U|4709
6D9J|1|5|C|4710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40