IL_6DCB_001
3D structure
- PDB id
- 6DCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2 Å
Loop
- Sequence
- AUG*CCGCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DCB_001 not in the Motif Atlas
- Geometric match to IL_6DCC_001
- Geometric discrepancy: 0.0626
- The information below is about IL_6DCC_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89984.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6DCB|1|B|A|3||||5_564
6DCB|1|B|U|4||||5_564
6DCB|1|B|G|5||||5_564
*
6DCB|1|B|C|102||||5_564
6DCB|1|B|C|103||||5_564
6DCB|1|B|G|104||||5_564
6DCB|1|B|C|105||||5_564
6DCB|1|B|U|106||||5_564
Current chains
- Chain B
- human 7SK RNA stem-loop 1 proximal
Nearby chains
- Chain A
- 7SK snRNA methylphosphate capping enzyme
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