IL_6DLQ_002

3D structure

PDB id

6DLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DLQ_002 not in the Motif Atlas

Geometric match to IL_6DLR_002

Geometric discrepancy: 0.063

The information below is about IL_6DLR_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6DLQ|1|A|G|16
6DLQ|1|A|G|17
6DLQ|1|A|U|18
6DLQ|1|A|U|19
6DLQ|1|A|C|20
*
6DLQ|1|A|G|42
6DLQ|1|A|U|43
6DLQ|1|A|C|44

Current chains

Chain A

PRPP Riboswitch

Nearby chains