IL_6DLQ_004

3D structure

PDB id

6DLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAC

Length

6 nucleotides

Bulged bases

6DLQ|1|A|A|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DLQ_004 not in the Motif Atlas

Geometric match to IL_6DLR_004

Geometric discrepancy: 0.0868

The information below is about IL_6DLR_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6DLQ|1|A|G|22
6DLQ|1|A|C|23
*
6DLQ|1|A|G|36
6DLQ|1|A|G|37
6DLQ|1|A|A|38
6DLQ|1|A|C|39

Current chains

Chain A

PRPP Riboswitch

Nearby chains