IL_6DNC_023
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_023 not in the Motif Atlas
- Homologous match to IL_6CZR_132
- Geometric discrepancy: 0.2201
- The information below is about IL_6CZR_132
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.3
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
6DNC|1|A|C|504
6DNC|1|A|G|505
6DNC|1|A|G|506
6DNC|1|A|C|507
6DNC|1|A|U|508
6DNC|1|A|A|509
6DNC|1|A|A|510
6DNC|1|A|C|511
*
6DNC|1|A|G|540
6DNC|1|A|G|541
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain QA
- 30S ribosomal protein S4
- Chain YA
- 30S ribosomal protein S12
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