IL_6DNC_032
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 6DNC|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_032 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.1071
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6DNC|1|A|U|662
6DNC|1|A|A|663
6DNC|1|A|G|664
6DNC|1|A|A|665
6DNC|1|A|G|666
*
6DNC|1|A|U|740
6DNC|1|A|G|741
6DNC|1|A|G|742
6DNC|1|A|A|743
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S ribosomal protein S15
- Chain EB
- 30S ribosomal protein S18
- Chain SA
- 30S ribosomal protein S6
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