IL_6DNC_037

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_037 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1056

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6DNC|1|A|G|887
6DNC|1|A|G|888
6DNC|1|A|A|889
6DNC|1|A|G|890
6DNC|1|A|U|891
6DNC|1|A|A|892
6DNC|1|A|C|893
6DNC|1|A|G|894
*
6DNC|1|A|U|905
6DNC|1|A|A|906
6DNC|1|A|A|907
6DNC|1|A|A|908
6DNC|1|A|A|909
6DNC|1|A|C|910

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain YA

30S ribosomal protein S12