IL_6DNC_042

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_042 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.1551

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6DNC|1|A|G|993
6DNC|1|A|A|994
6DNC|1|A|C|995
6DNC|1|A|A|996
6DNC|1|A|U|997
*
6DNC|1|A|A|1044
6DNC|1|A|C|1045

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S14

Chain MA

Peptide chain release factor 1