IL_6DNC_047

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6DNC|1|A|C|1200, 6DNC|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_047 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1081

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6DNC|1|A|G|1057
6DNC|1|A|G|1058
*
6DNC|1|A|U|1199
6DNC|1|A|C|1200
6DNC|1|A|A|1201
6DNC|1|A|U|1202
6DNC|1|A|C|1203

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S14

Chain PA

30S ribosomal protein S3

Chain WA

30S ribosomal protein S10