IL_6DNC_058

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_058 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1707

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6DNC|1|A|G|1401
6DNC|1|A|C|1402
6DNC|1|A|C|1403
6DNC|1|A|C|1404
*
6DNC|1|A|G|1497
6DNC|1|A|U|1498
6DNC|1|A|A|1499
6DNC|1|A|A|1500
6DNC|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain KA

mRNA

Chain LA

Transfer RNA; tRNA

Chain MA

Peptide chain release factor 1

Chain YA

30S ribosomal protein S12