IL_6DNC_066
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_066 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.118
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|G|24
6DNC|1|B|U|25
6DNC|1|B|G|26
6DNC|1|B|G|27
6DNC|1|B|A|28
6DNC|1|B|U|29
6DNC|1|B|G|30
*
6DNC|1|B|C|510
6DNC|1|B|U|511
6DNC|1|B|G|512
6DNC|1|B|A|513
6DNC|1|B|A|514
6DNC|1|B|A|515
6DNC|1|B|C|516
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain FA
- 50S ribosomal protein L32
- Chain U
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L22
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