IL_6DNC_078

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_078 not in the Motif Atlas

Geometric match to IL_5MWI_001

Geometric discrepancy: 0.1565

The information below is about IL_5MWI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6DNC|1|B|C|564
6DNC|1|B|C|565
6DNC|1|B|U|566
*
6DNC|1|B|A|575
6DNC|1|B|U|576
6DNC|1|B|G|577

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L15

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21