IL_6DNC_081

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6DNC|1|B|G|801, 6DNC|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_081 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1441

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6DNC|1|B|G|674
6DNC|1|B|A|675
6DNC|1|B|A|676
6DNC|1|B|A|677
6DNC|1|B|C|678
*
6DNC|1|B|G|799
6DNC|1|B|A|800
6DNC|1|B|G|801
6DNC|1|B|A|802
6DNC|1|B|U|803
6DNC|1|B|A|804
6DNC|1|B|G|805
6DNC|1|B|C|806

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L4

Chain P

50S ribosomal protein L15