IL_6DNC_088

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

6DNC|1|B|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_088 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.1642

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6DNC|1|B|A|844
6DNC|1|B|A|845
6DNC|1|B|U|846
6DNC|1|B|U|847
*
6DNC|1|B|A|933
6DNC|1|B|U|934

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain DA

50S ribosomal protein L30