IL_6DNC_098
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6DNC|1|B|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_098 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.141
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6DNC|1|B|C|998
6DNC|1|B|U|999
6DNC|1|B|A|1000
6DNC|1|B|A|1001
6DNC|1|B|G|1002
*
6DNC|1|B|C|1153
6DNC|1|B|G|1154
6DNC|1|B|A|1155
6DNC|1|B|A|1156
6DNC|1|B|G|1157
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain DA
- 50S ribosomal protein L30
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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