IL_6DNC_112

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_112 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1613

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6DNC|1|B|G|1310
6DNC|1|B|G|1311
6DNC|1|B|U|1312
6DNC|1|B|U|1313
*
6DNC|1|B|A|1603
6DNC|1|B|C|1604

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain HA

50S ribosomal protein L34

Chain X

50S ribosomal protein L23