IL_6DNC_113
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCAAC*GGG
- Length
- 8 nucleotides
- Bulged bases
- 6DNC|1|B|G|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_113 not in the Motif Atlas
- Homologous match to IL_5J7L_291
- Geometric discrepancy: 0.1611
- The information below is about IL_5J7L_291
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
6DNC|1|B|C|1319
6DNC|1|B|C|1320
6DNC|1|B|A|1321
6DNC|1|B|A|1322
6DNC|1|B|C|1323
*
6DNC|1|B|G|1331
6DNC|1|B|G|1332
6DNC|1|B|G|1333
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L23
Coloring options: