IL_6DNC_119

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6DNC|1|B|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_119 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1192

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6DNC|1|B|C|1437
6DNC|1|B|U|1438
6DNC|1|B|A|1439
6DNC|1|B|U|1440
*
6DNC|1|B|A|1551
6DNC|1|B|A|1552
6DNC|1|B|A|1553
6DNC|1|B|U|1554
6DNC|1|B|G|1555

Current chains

Chain B

23S ribosomal RNA

Nearby chains