IL_6DNC_136

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6DNC|1|B|A|1899, 6DNC|1|B|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_136 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2475

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6DNC|1|B|U|1841
6DNC|1|B|G|1842
6DNC|1|B|C|1843
*
6DNC|1|B|G|1897
6DNC|1|B|U|1898
6DNC|1|B|A|1899
6DNC|1|B|A|1900
6DNC|1|B|A|1901

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain F

50S ribosomal protein L2