IL_6DNC_140
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6DNC|1|B|A|1938, 6DNC|1|B|U|1944, 6DNC|1|B|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_140 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1566
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
6DNC|1|B|C|1934
6DNC|1|B|G|1935
6DNC|1|B|A|1936
6DNC|1|B|A|1937
6DNC|1|B|A|1938
6DNC|1|B|U|1939
6DNC|1|B|U|1940
6DNC|1|B|C|1941
6DNC|1|B|C|1942
6DNC|1|B|U|1943
6DNC|1|B|U|1944
6DNC|1|B|G|1945
*
6DNC|1|B|C|1961
6DNC|1|B|C|1962
6DNC|1|B|U|1963
6DNC|1|B|G|1964
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- 50S ribosomal protein L2
- Chain MA
- Peptide chain release factor 1
Coloring options: