IL_6DNC_159

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_159 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2615

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6DNC|1|B|C|2507
6DNC|1|B|G|2508
6DNC|1|B|G|2509
*
6DNC|1|B|C|2579
6DNC|1|B|U|2580
6DNC|1|B|G|2581
6DNC|1|B|G|2582

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain MA

Peptide chain release factor 1