IL_6DNC_166

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_166 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1036

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6DNC|1|B|C|2652
6DNC|1|B|U|2653
6DNC|1|B|A|2654
6DNC|1|B|G|2655
6DNC|1|B|U|2656
6DNC|1|B|A|2657
6DNC|1|B|C|2658
*
6DNC|1|B|G|2663
6DNC|1|B|G|2664
6DNC|1|B|A|2665
6DNC|1|B|C|2666
6DNC|1|B|C|2667
6DNC|1|B|G|2668

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L6