IL_6DNC_190

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_190 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2352

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6DNC|1|B|U|2106
6DNC|1|B|G|2107
6DNC|1|B|A|2108
*
6DNC|1|B|U|2181
6DNC|1|B|U|2182
6DNC|1|B|A|2183

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain E

50S ribosomal protein L1

Chain XA

30S ribosomal protein S11