IL_6DTI_032
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DTI_032 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0554
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6DTI|1|A|G|865
6DTI|1|A|G|866
6DTI|1|A|A|867
6DTI|1|A|G|868
6DTI|1|A|U|869
6DTI|1|A|A|870
6DTI|1|A|C|871
6DTI|1|A|G|872
*
6DTI|1|A|U|883
6DTI|1|A|G|884
6DTI|1|A|A|885
6DTI|1|A|A|886
6DTI|1|A|A|887
6DTI|1|A|C|888
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
Coloring options: