IL_6DTI_046

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UACAAAG*CAAAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_046 not in the Motif Atlas

Homologous match to IL_4LFB_051

Geometric discrepancy: 0.0756

The information below is about IL_4LFB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6DTI|1|A|U|1224
6DTI|1|A|A|1225
6DTI|1|A|C|1226
6DTI|1|A|A|1227
6DTI|1|A|A|1228
6DTI|1|A|A|1229
6DTI|1|A|G|1230
*
6DTI|1|A|C|1261
6DTI|1|A|A|1262
6DTI|1|A|A|1263
6DTI|1|A|A|1264
6DTI|1|A|A|1265
6DTI|1|A|A|1266
6DTI|1|A|G|1267

Current chains

Chain A

16s rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z

Chain V

30S ribosomal protein Thx