3D structure

PDB id
6DTI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DTI_046 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.0756
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

6DTI|1|A|U|1224
6DTI|1|A|A|1225
6DTI|1|A|C|1226
6DTI|1|A|A|1227
6DTI|1|A|A|1228
6DTI|1|A|A|1229
6DTI|1|A|G|1230
*
6DTI|1|A|C|1261
6DTI|1|A|A|1262
6DTI|1|A|A|1263
6DTI|1|A|A|1264
6DTI|1|A|A|1265
6DTI|1|A|A|1266
6DTI|1|A|G|1267

Current chains

Chain A
16s rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z
Chain V
30S ribosomal protein Thx

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1424 s