IL_6DZI_041

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

6DZI|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_041 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.3339

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6DZI|1|A|G|1149
6DZI|1|A|A|1150
6DZI|1|A|U|1151
6DZI|1|A|G|1152
6DZI|1|A|U|1153
*
6DZI|1|A|G|1238
6DZI|1|A|C|1239
6DZI|1|A|G|1240
6DZI|1|A|C|1241

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

50S ribosomal protein L16

Chain f

50S ribosomal protein L36