IL_6DZI_046

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6DZI|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_046 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1867

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

6DZI|1|A|C|1322
6DZI|1|A|G|1323
6DZI|1|A|G|1324
6DZI|1|A|U|1325
6DZI|1|A|G|1326
6DZI|1|A|A|1327
6DZI|1|A|A|1328
6DZI|1|A|G|1329
*
6DZI|1|A|U|1349
6DZI|1|A|G|1350
6DZI|1|A|G|1351
6DZI|1|A|A|1352
6DZI|1|A|G|1353

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain R

50S ribosomal protein L20